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1

Enzymatic Polymerization of High Molecular Weight DNA Amphiphiles That Self-Assemble into Star-Like Micelles

Tang, Lei, Tjong, Vinalia, Li, Nan, Yingling, Yaroslava G., Chilkoti, Ashutosh, Zauscher, Stefan

Journal:

Advanced Materials

Year:

2014

Language:

english

File:

PDF, 655 KB

english, 2014

2

Microtubules and cellulose biosynthesis: the emergence of new players

Li, Shundai, Lei, Lei, Yingling, Yaroslava G, Gu, Ying

Journal:

Current Opinion in Plant Biology

Year:

2015

Language:

english

File:

PDF, 788 KB

english, 2015

3

Fullerenes in Aromatic Solvents: Correlation between Solvation Shell Structure, Solvate Formation, and Solubility

Peerless, James S, Bowers, Graham Hunter, Kwansa, Albert L., Yingling, Yaroslava G

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

4

Fluorescence blinking as an output signal for biosensing

Roark, Brandon, Tan, Jenna A., Ivanina, Anna, Chandler, Morgan, Castaneda, Jose, Kim, Ho Shin, Jawahar, Shriram, Viard, Mathias, Talic, Strahinja, Wustholz, Kristin L., Yingling, Yaroslava G, Jones, M

Journal:

Year:

2016

Language:

english

File:

PDF, 1.35 MB

english, 2016

5

Hairy Graphenes: Wrapping Nanocellulose Nets around Graphene Oxide Sheets

Xiong, Rui, Kim, Ho Shin, Korolovych, Volodymyr F, Zhang, Shuaidi, Yingling, Yaroslava, Tsukruk, Vladimir V.

Journal:

Angewandte Chemie International Edition

Year:

2018

Language:

english

File:

PDF, 1.26 MB

english, 2018

6

Enzymatic synthesis of nucleobase-modified single-stranded DNA offers tunable resistance to nuclease degradation

Gu, Renpeng, Oweida, Thomas, Yingling, Yaroslava G, Chilkoti, Ashutosh, Zauscher, Stefan

Journal:

Biomacromolecules

Year:

2018

Language:

english

File:

PDF, 3.64 MB

english, 2018

7

Computer Simulations of Laser Ablation of Molecular Substrates

Leonid V. Zhigilei, Elodie Leveugle, Barbara J. Garrison, Yaroslava G. Yingling, Michael I. Zeifman

Journal:

Year:

2003

File:

PDF, 51 KB

2003

8

Computational investigation into the mechanisms of UV ablation of poly(methyl methacrylate)

Manish Prasad, Patrick F. Conforti, Barbara J. Garrison, Yaroslava G. Yingling

Journal:

Applied Surface Science

Year:

2007

Language:

english

File:

PDF, 308 KB

english, 2007

9

The prediction of the wild-type telomerase RNA pseudoknot structure and the pivotal role of the bulge in its formation

Yaroslava G. Yingling, Bruce A. Shapiro

Journal:

Journal of Molecular Graphics and Modelling

Year:

2006

Language:

english

File:

PDF, 1.26 MB

english, 2006

10

Photochemical induced effects in material ejection in laser ablation

Yaroslava G Yingling, Barbara J Garrison

Journal:

Chemical Physics Letters

Year:

2002

Language:

english

File:

PDF, 368 KB

english, 2002

11

The role of the photochemical fragmentation in laser ablation: a molecular dynamics study

Yaroslava G. Yingling, Leonid V. Zhigilei, Barbara J. Garrison

Journal:

Journal of Photochemistry and Photobiology A: Chemistry

Year:

2001

Language:

english

File:

PDF, 134 KB

english, 2001

12

Molecular dynamics simulations of matrix-assisted laser desorption—connections to experiment

Leonid V. Zhigilei, Yaroslava G. Yingling, Tatiana E. Itina, Tracy A. Schoolcraft, Barbara J. Garrison

Journal:

International Journal of Mass Spectrometry

Year:

2003

Language:

english

File:

PDF, 710 KB

english, 2003

13

Theoretical perspective on properties of DNA-functionalized surfaces

Abhishek Singh, Hamed Eksiri, Yaroslava G. Yingling

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

2011

Language:

english

File:

PDF, 716 KB

english, 2011

14

Incorporation of chemical reactions into UV photochemical ablation of coarse-grained material

Yaroslava G. Yingling, Barbara J. Garrison

Journal:

Applied Surface Science

Year:

2007

Language:

english

File:

PDF, 579 KB

english, 2007

15

Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation

Justin G. Railsback, Abhishek Singh, Ryan C. Pearce, Timothy E. McKnight, Ramón Collazo, Zlatko Sitar, Yaroslava G. Yingling, Anatoli V. Melechko

Journal:

Advanced Materials

Year:

2012

Language:

english

File:

PDF, 811 KB

english, 2012

16

The role of hydrogen bonding in water-mediated glucose solubility in ionic liquids

Ho Shin Kim, Rakhee Pani, Sung Ho Ha, Yoon-Mo Koo, Yaroslava G. Yingling

Journal:

Journal of Molecular Liquids

Year:

2012

Language:

english

File:

PDF, 926 KB

english, 2012

17

Bridging the gap in RNA structure prediction

Bruce A Shapiro, Yaroslava G Yingling, Wojciech Kasprzak, Eckart Bindewald

Journal:

Current Opinion in Structural Biology

Year:

2007

Language:

english

File:

PDF, 542 KB

english, 2007

18

Photochemical fragmentation processes in laser ablation of organic solids

Yaroslava G. Yingling, Leonid V. Zhigilei, Barbara J. Garrison

Journal:

Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms

Year:

2001

Language:

english

File:

PDF, 97 KB

english, 2001

19

Photochemical ablation of organic solids

Yaroslava G. Yingling, Barbara J. Garrison

Journal:

Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms

Year:

2003

Language:

english

File:

PDF, 208 KB

english, 2003

20

Gold Nanoparticles: Weakly Charged Cationic Nanoparticles Induce DNA Bending and Strand Separation (Adv. Mater. 31/2012)

Justin G. Railsback, Abhishek Singh, Ryan C. Pearce, Timothy E. McKnight, Ramón Collazo, Zlatko Sitar, Yaroslava G. Yingling, Anatoli V. Melechko

Journal:

Advanced Materials

Year:

2012

File:

PDF, 919 KB

2012

21

Dynamic Behavior of the Telomerase RNA Hairpin Structure and its Relationship to Dyskeratosis Congenita

Yaroslava G. Yingling, Bruce A. Shapiro

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 982 KB

english, 2005

22

Computational and Experimental Determination of the tRNA-like Structure in the 3′UTR of the Turnip Crinkle Virus (TCV)

Kasprzak, Wojciech K., Yingling, Yaroslava G., Simon, Anne E., Shapiro, Bruce A.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 136 KB

english, 2009

23

Computational Discovery Of The Electronegative Channel In RNA Loop-loop Interactions

Semichaevsky, Andrey, Singh, Abhishek, Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 37 KB

english, 2009

24

Cationic Sequence Dependence in Nucleic Acid Structures

Sethaphong, Latsavongsakda, Singh, Abhishek, Marlowe, Ashley E., Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 110 KB

english, 2010

25

Characterization of Osteogenesis Imperfecta Mutations in Type I Collagen: A Molecular Dynamics Study

Marlowe, Ashley E., Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

26

Nucleic Acid Helical Conformation and Sequence Effects on Cationic Binding

Sethaphong, Latsavongsakda, Yingling, Yaroslava

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 73 KB

english, 2011

27

Molecular Dynamics Simulation Studies on the Hybridization Events of Surface Immobilized DNA

Singh, Abhishek, Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 58 KB

english, 2011

28

Interactions of Cations with RNA Loop-Loop Complexes

Singh, Abhishek, Sethaphong, Latsavongsakda, Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 616 KB

english, 2011

29

The effect of point mutations on structure and mechanical properties of collagen-like fibril: A molecular dynamics study

Marlowe, Ashley E., Singh, Abhishek, Yingling, Yaroslava G.

Journal:

Materials Science and Engineering: C

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

30

Coarse-Grained Model of the Interaction of Light with Polymeric Material: Onset of Ablation

Yingling, Yaroslava G., Garrison, Barbara J.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 460 KB

english, 2005

31

Effect of Oligonucleotide Length on the Assembly of DNA Materials: Molecular Dynamics Simulations of Layer-by-Layer DNA Films

Singh, Abhishek, Snyder, Stacy, Lee, Lillian, Johnston, Angus P. R., Caruso, Frank, Yingling, Yaroslava G.

Journal:

Year:

2010

Language:

english

File:

PDF, 4.29 MB

english, 2010

32

Simulations of Stretching Single Stranded DNA

Singh, Abhishek, Yingling, Yaroslava G.

Journal:

MRS Proceedings

Year:

2011

Language:

english

File:

PDF, 187 KB

english, 2011

33

Cellulose synthases: new insights from crystallography and modeling

Slabaugh, Erin, Davis, Jonathan K., Haigler, Candace H., Yingling, Yaroslava G., Zimmer, Jochen

Journal:

Trends in Plant Science

Year:

2013

Language:

english

File:

PDF, 4.10 MB

english, 2013

34

The Sequence of HIV-1 TAR RNA Helix Controls Cationic Distribution †

Sethaphong, Latsavongsakda, Singh, Abhishek, Marlowe, Ashley E., Yingling, Yaroslava G.

Journal:

The Journal of Physical Chemistry C

Year:

2010

Language:

english

File:

PDF, 2.44 MB

english, 2010

35

Structure Prediction of a Cellulose Synthase Protein and the Effect of Mutations

Singh, Abhishek, Sethaphong, Latsavongsakda, Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 98 KB

english, 2012

36

Computational Prediction of Cellulose Synthase Protein Structure

Vargas, Andrés, Sethaphong, Latsavongsakda, Yingling, Yaroslava

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 39 KB

english, 2011

37

Interactions of Gold Nanoparticles with DNA: Interplay of Sequence, Ligands Charge and Polarity

Singh, Abhishek, Li, Nan, Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 61 KB

english, 2012

38

Courses

Singh, Abhishek, Li, Nan, Yingling, Yaroslava G.

Journal:

Radiotherapy and Oncology

Year:

1987

Language:

english

File:

PDF, 56 KB

english, 1987

39

Molecular Dynamics and Distribution of Ions in Kissing Loop

Singh, Abhishek, Sethaphong, Latsavongsakda, Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

40

ERRATUM.

Singh, Abhishek, Sethaphong, Latsavongsakda, Yingling, Yaroslava G.

Journal:

Year:

1832

Language:

english

File:

PDF, 101 KB

english, 1832

41

Tuning DNA Bending with Charged Nanoparticles: Molecular Simulations

Singh, Abhishek, Li, Nan, Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 58 KB

english, 2013

42

Persistence Length of Single Stranded DNA: Effect of Length, Sequence and Surface

Kim, Ho Shin, Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 80 KB

english, 2014

43

The Effect of Genetic Mutations on Structural and Mechanical Properties of Collagen: Molecular Dynamics Simulations

Marlowe, Ashley E., Yingling, Yaroslava G.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 39 KB

english, 2010

44

Computer Simulations of Laser Ablation of Molecular Substrates

Zhigilei, Leonid V., Leveugle, Elodie, Garrison, Barbara J., Yingling, Yaroslava G., Zeifman, Michael I.

Journal:

Chemical Reviews

Year:

2003

Language:

english

File:

PDF, 1.63 MB

english, 2003

45

The relationship between enhanced enzyme activity and structural dynamics in ionic liquids: a combined computational and experimental study

Kim, Ho Shin, Ha, Sung Ho, Sethaphong, Latsavongsakda, Koo, Yoon-Mo, Yingling, Yaroslava G.

Journal:

Physical Chemistry Chemical Physics

Year:

2014

Language:

english

File:

PDF, 2.51 MB

english, 2014

46

Role of Solvent and Dendritic Architecture on the Redox Core Encapsulation

Pani, Rakhee C., Yingling, Yaroslava G.

Journal:

Journal of Physical Chemistry A

Year:

2012

Language:

english

File:

PDF, 2.31 MB

english, 2012

47

Correlating fullerene diffusion with the polythiophene morphology: molecular dynamics simulations

Pani, Rakhee C., Bond, Benjamin D., Krishnan, Ganesh, Yingling, Yaroslava G.

Journal:

Year:

2013

Language:

english

File:

PDF, 660 KB

english, 2013

48

Computational Design of an RNA Hexagonal Nanoring and an RNA Nanotube

Yingling, Yaroslava G., Shapiro, Bruce A.

Journal:

Year:

2007

Language:

english

File:

PDF, 643 KB

english, 2007

49

Molecular Description of the LCST Behavior of an Elastin-Like Polypeptide

Li, Nan K., Quiroz, Felipe García, Hall, Carol K., Chilkoti, Ashutosh, Yingling, Yaroslava G.

Journal:

Biomacromolecules

Year:

2014

Language:

english

File:

PDF, 4.11 MB

english, 2014

50

Coarse-Grained Chemical Reaction Model

Yingling, Yaroslava G., Garrison, Barbara J.

Journal:

Journal of Physical Chemistry B

Year:

2004

Language:

english

File:

PDF, 622 KB

english, 2004